Novel Furan-containing Peptide-based Inhibitors of Protein Arginine Deiminase Type IV (PAD4)

Abstract

Protein arginine deiminase type IV (PAD4) is responsible for the post-translational conversion of peptidylarginine to peptidylcitrulline. Citrullinated protein is the autoantigen in rheumatoid arthritis, and therefore, PAD4 is currently a promising therapeutic target for the disease. Recently, we reported the importance of the furan ring in the structure of PAD4 inhibitors. In this study, the furan ring was incorporated into peptides to act as the "warhead" of the inhibitors for PAD4. IC₅₀ studies showed that the furan-containing peptide-based inhibitors were able to inhibit PAD4 to a better extent than the furan-containing small molecules that were previously reported. The best peptide-based inhibitor inhibited PAD4 reversibly and competitively with an IC₅₀ value of 243.2 ± 2.4 μM. NMR spectroscopy and NMR-restrained molecular dynamic simulations revealed that the peptide-based inhibitor had a random structure. Molecular docking studies showed that the peptide-based inhibitor entered the binding site and interacted with the essential amino acids involved in the catalytic activity. The peptide-based inhibitor could be further developed into a therapeutic drug for rheumatoid arthritis.

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A potent furan-containing peptide-based inhibitor of protein arginine deiminase type IV has been designed and synthesized. The IC₅₀ value of the inhibitor was lower than the furan-containing small molecules that were reported previously. NMR spectroscopy and NMR restrained molecular dynamic simulations revealed that the peptide-based inhibitor had a random coil structure. Molecular docking studies showed that the peptide-based inhibitor entered the binding site and interacted with the essential amino acids involved in the catalytic activity.

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