IJMS, Vol. 17, Pages 58: Effect of Chromatin Structure on the Extent and Distribution of DNA Double Strand Breaks Produced by Ionizing Radiation; Comparative Study of hESC and Differentiated Cells Lines

Chromatin structure affects the extent of DNA damage and repair. Thus, it has been shown that heterochromatin is more protective against DNA double strand breaks (DSB) formation by ionizing radiation (IR); and that DNA DSB repair may proceed differently in hetero- and euchromatin regions. Human embryonic stem cells (hESC) have a more open chromatin structure than differentiated cells. Here, we study the effect of chromatin structure in hESC on initial DSB formation and subsequent DSB repair. DSB were scored by comet assay; and DSB repair was assessed by repair foci formation via 53BP1 antibody staining. We found that in hESC, heterochromatin is confined to distinct regions, while in differentiated cells it is distributed more evenly within the nuclei. The same dose of ionizing radiation produced considerably more DSB in hESC than in differentiated derivatives, normal human fibroblasts; and one cancer cell line. At the same time, the number of DNA repair foci were not statistically different among these cells. We showed that in hESC, DNA repair foci localized almost exclusively outside the heterochromatin regions. We also noticed that exposure to ionizing radiation resulted in an increase in heterochromatin marker H3K9me3 in cancer HT1080 cells, and to a lesser extent in IMR90 normal fibroblasts, but not in hESCs. These results demonstrate the importance of chromatin conformation for DNA protection and DNA damage repair; and indicate the difference of these processes in hESC.

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Materials, Vol. 9, Pages 20: Activation of Aspen Wood with Carbon Dioxide and Phosphoric Acid for Removal of Total Organic Carbon from Oil Sands Produced Water: Increasing the Yield with Bio-Oil Recycling

Several samples of activated carbon were prepared by physical (CO2) and chemical (H3PO4) activation of aspen wood and tested for the adsorption of organic compounds from water generated during the recovery of bitumen using steam assisted gravity drainage. Total organic carbon removal by the carbon samples increased proportionally with total pore volume as determined from N2 adsorption isotherms at −196 °C. The activated carbon produced by CO2 activation had similar removal levels for total organic carbon from the water (up to 70%) to those samples activated with H3PO4, but lower yields, due to losses during pyrolysis and activation. A method to increase the yield when using CO2 activation was proposed and consisted of recycling bio-oil produced from previous runs to the aspen wood feed, followed by either KOH addition (0.48%) or air pretreatment (220 °C for 3 h) before pyrolysis and activation. By recycling the bio-oil, the yield of CO2 activated carbon (after air pretreatment of the mixture) was increased by a factor of 1.3. Due to the higher carbon yield, the corresponding total organic carbon removal, per mass of wood feed, increased by a factor of 1.2 thus improving the overall process efficiency.

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IJMS, Vol. 17, Pages 53: Cardiovascular Dysfunction Following Burn Injury: What We Have Learned from Rat and Mouse Models

Severe burn profoundly affects organs both proximal and distal to the actual burn site. Cardiovascular dysfunction is a well-documented phenomenon that increases morbidity and mortality following a massive thermal trauma. Beginning immediately post-burn, during the ebb phase, cardiac function is severely depressed. By 48 h post-injury, cardiac function rebounds and the post-burn myocardium becomes tachycardic and hyperinflammatory. While current clinical trials are investigating a variety of drugs targeted at reducing aspects of the post-burn hypermetabolic response such as heart rate and cardiac work, there is still a paucity of knowledge regarding the underlying mechanisms that induce cardiac dysfunction in the severely burned. There are many animal models of burn injury, from rodents, to sheep or swine, but the majority of burn related cardiovascular investigations have occurred in rat and mouse models. This literature review consolidates the data supporting the prevalent role that β-adrenergic receptors play in mediating post-burn cardiac dysfunction and the idea that pharmacological modulation of this receptor family is a viable therapeutic target for resolving burn-induced cardiac deficits.

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Sensors, Vol. 16, Pages 54: PIMR: Parallel and Integrated Matching for Raw Data

With the trend of high-resolution imaging, computational costs of image matching have substantially increased. In order to find the compromise between accuracy and computation in real-time applications, we bring forward a fast and robust matching algorithm, named parallel and integrated matching for raw data (PIMR). This algorithm not only effectively utilizes the color information of raw data, but also designs a parallel and integrated framework to shorten the time-cost in the demosaicing stage. Experiments show that compared to existing state-of-the-art methods, the proposed algorithm yields a comparable recognition rate, while the total time-cost of imaging and matching is significantly reduced.

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Nanomaterials, Vol. 6, Pages 6: Effects of Thickness and Amount of Carbon Nanofiber Coated Carbon Fiber on Improving the Mechanical Properties of Nanocomposites

In the current study, carbon nanofibers (CNFs) were grown on a carbon fiber (CF) surface by using the chemical vapor deposition method (CVD) and the influences of some parameters of the CVD method on improving the mechanical properties of a polypropylene (PP) composite were investigated. To obtain an optimum surface area, thickness, and yield of the CNFs, the parameters of the chemical vapor deposition (CVD) method, such as catalyst concentration, reaction temperature, reaction time, and hydrocarbon flow rate, were optimized. It was observed that the optimal surface area, thickness, and yield of the CNFs caused more adhesion of the fibers with the PP matrix, which enhanced the composite properties. Besides this, the effectiveness of reinforcement of fillers was fitted with a mathematical model obtaining good agreement between the experimental result and the theoretical prediction. By applying scanning electronic microscope (SEM), transmission electron microscope (TEM), and Raman spectroscopy, the surface morphology and structural information of the resultant CF-CNF were analyzed. Additionally, SEM images and a mechanical test of the composite with a proper layer of CNFs on the CF revealed not only a compactness effect but also the thickness and surface area roles of the CNF layers in improving the mechanical properties of the composites.

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Materials, Vol. 9, Pages 16: Characterization of a Polyacrylamide Solution Used for Remediation of Petroleum Contaminated Soils

Biopolymers are viewed as effective and eco-friendly agents in soil modification. This study focuses on the wettability analysis of polyacrylamide (PAM) solutions for soil remediation. The contact angle, surface tension, and viscosity of PAM solutions were experimentally evaluated in air- and decane-biopolymer solution systems. Furthermore, a micromodel was used to investigate the pore-scale displacement phenomena during the injection of the PAM solution in decane and or air saturated pores. The contact angle of the PAM solution linearly increases with increasing concentration in air but not in decane. The surface tension between the PAM solution and air decreases at increasing concentration. The viscosity of the PAM solution is highly dependent on the concentration of the solution, shear rate, and temperature. Low flow rate and low concentration result in a low displacement ratio level, which is defined as the volume ratio between the injected and the defended fluids in the pores. The displacement ratio is higher for PAM solutions than distilled water; however, a higher concentration does not necessarily guarantees a higher displacement ratio. Soil remediation could be conducted cost-efficiently at high flow rates but with moderate concentration levels.

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Materials, Vol. 9, Pages 17: Energetic Study of Helium Cluster Nucleation and Growth in 14YWT through First Principles

First principles calculations have been performed to energetically investigate the helium cluster nucleation, formation and growth behavior in the nano-structured ferritic alloy 14YWT. The helium displays strong affinity to the oxygen:vacancy (O:Vac) pair. By investigating various local environments of the vacancy, we find that the energy cost for He cluster growth increases with the appearance of solutes in the reference unit. He atom tends to join the He cluster in the directions away from the solute atoms. Meanwhile, the He cluster tends to expand in the directions away from the solute atoms. A growth criterion is proposed based on the elastic instability strain of the perfect iron lattice in order to determine the maximum number of He atoms at the vacancy site. We find that up to seven He atoms can be trapped at a single vacancy. However, it is reduced to five if the vacancy is pre-occupied by an oxygen atom. Furthermore, the solute atoms within nanoclusters, such as Ti and Y, will greatly limit the growth of the He cluster. A migration energy barrier study is performed to discuss the reduced mobility of the He atom/He cluster in 14YWT.

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Agronomy, Vol. 6, Pages 2: Silage Maize and Sugar Beet for Biogas Production in Rotations and Continuous Cultivation: Dry Matter and Estimated Methane Yield

Since silage maize is the main crop grown for biogas production (biomass crop) in Germany; its increasing cultivation is critically discussed in terms of social and agronomical aspects. To investigate if sugar beet is suitable as an alternative biomass crop to silage maize; three-year field trials with both biomass crops in rotations with winter wheat (food crop) and continuous cultivation were conducted at three highly productive sites. Dry matter (DM) yield per hectare was measured via field trials whereas methane yield per hectare was estimated via a calculation. Higher annual DM yield was achieved by silage maize (19.5–27.4 t∙ha−1∙a−1) compared to sugar beet root (10.7–23.0 t∙ha−1∙a−1). Dry matter yield was found to be the main driver for the estimated methane yield. Thus; higher estimated methane yield was produced by silage maize (6458–9388 Nm3∙ha−1) with overlaps to sugar beet root (3729–7964 Nm3∙ha−1). We; therefore; classify sugar beet as a suitable alternative biomass crop to silage maize; especially when cultivated in crop rotations with winter wheat. Additionally; we found that the evaluation of entire crop rotations compared to single crops is a more precise approach since it includes rotational effects.

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IJMS, Vol. 17, Pages 53: Cardiovascular Dysfunction Following Burn Injury: What We Have Learned from Rat and Mouse Models

Severe burn profoundly affects organs both proximal and distal to the actual burn site. Cardiovascular dysfunction is a well-documented phenomenon that increases morbidity and mortality following a massive thermal trauma. Beginning immediately post-burn, during the ebb phase, cardiac function is severely depressed. By 48 h post-injury, cardiac function rebounds and the post-burn myocardium becomes tachycardic and hyperinflammatory. While current clinical trials are investigating a variety of drugs targeted at reducing aspects of the post-burn hypermetabolic response such as heart rate and cardiac work, there is still a paucity of knowledge regarding the underlying mechanisms that induce cardiac dysfunction in the severely burned. There are many animal models of burn injury, from rodents, to sheep or swine, but the majority of burn related cardiovascular investigations have occurred in rat and mouse models. This literature review consolidates the data supporting the prevalent role that β-adrenergic receptors play in mediating post-burn cardiac dysfunction and the idea that pharmacological modulation of this receptor family is a viable therapeutic target for resolving burn-induced cardiac deficits.

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Nutrients, Vol. 8, Pages 22: Regular Fat and Reduced Fat Dairy Products Show Similar Associations with Markers of Adolescent Cardiometabolic Health

Reduced fat dairy products are generally recommended for adults and children over the age of two years. However, emerging evidence suggests that dairy fat may not have detrimental health effects. We aimed to investigate prospective associations between consumption of regular versus reduced fat dairy products and cardiometabolic risk factors from early to late adolescence. In the West Australian Raine Study, dairy intake was assessed using semi-quantitative food frequency questionnaires in 860 adolescents at 14 and 17-year follow-ups; 582 of these also had blood biochemistry at both points. Using generalized estimating equations, we examined associations with cardiometabolic risk factors. Models incorporated reduced fat and regular fat dairy together (in serves/day) and were adjusted for a range of factors including overall dietary pattern. In boys, there was a mean reduction in diastolic blood pressure of 0.66 mmHg (95% CI 0.23–1.09) per serve of reduced fat dairy and an independent, additional reduction of 0.47 mmHg (95% CI 0.04–0.90) per serve of regular fat dairy. Each additional serve of reduced fat dairy was associated with a 2% reduction in HDL-cholesterol (95% CI 0.97–0.995) and a 2% increase in total: HDL-cholesterol ratio (95% CI 1.002–1.03); these associations were not observed with regular fat products. In girls, there were no significant independent associations observed in fully adjusted models. Although regular fat dairy was associated with a slightly better cholesterol profile in boys, overall, intakes of both regular fat and reduced fat dairy products were associated with similar cardiometabolic associations in adolescents.

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Nutrients, Vol. 8, Pages 19: Negative, Null and Beneficial Effects of Drinking Water on Energy Intake, Energy Expenditure, Fat Oxidation and Weight Change in Randomized Trials: A Qualitative Review

Drinking water has heterogeneous effects on energy intake (EI), energy expenditure (EE), fat oxidation (FO) and weight change in randomized controlled trials (RCTs) involving adults and/or children. The aim of this qualitative review of RCTs was to identify conditions associated with negative, null and beneficial effects of drinking water on EI, EE, FO and weight, to generate hypotheses about ways to optimize drinking water interventions for weight management. RCT conditions that are associated with negative or null effects of drinking water on EI, EE and/or FO in the short term are associated with negative or null effects on weight over the longer term. RCT conditions that are associated with lower EI, increased EE and/or increased FO in the short term are associated with less weight gain or greater weight loss over time. Drinking water instead of caloric beverages decreases EI when food intake is ad libitum. Drinking water increases EE in metabolically-inflexible, obese individuals. Drinking water increases FO when blood carbohydrate and/or insulin concentrations are not elevated and when it is consumed instead of caloric beverages or in volumes that alter hydration status. Further research is needed to confirm the observed associations and to determine if/what specific conditions optimize drinking water interventions for weight management.

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Forests, Vol. 7, Pages 11: History and Productivity Determine the Spatial Distribution of Key Habitats for Biodiversity in Norwegian Forest Landscapes

Retention forestry, including the retention of woodland key habitats (WKH) at the forest stand scale, has become an essential management practice in boreal forests. Here, we investigate the spatial distribution of 9470 habitat patches, mapped according to the Complementary Habitat Inventory method (CHI habitats), as potential WKHs in 10 sample areas in Norway. We ask whether there are parts of the forest landscapes that have consistently low or high density of CHI habitats compared to the surveyed landscape as a whole, and therefore have a low or high degree of conflict with harvesting, respectively. We found that there was a general pattern of clumped distribution of CHI habitats at distances up to a few kilometres. Furthermore, results showed that most types of CHI habitats were approximately two to three times as common in the 25% steepest slopes, lowest altitudes and highest site indices. CHI habitats that are most common in old-growth forests were found at longer distances from roads, whereas habitats rich in deciduous trees were found at shorter distances from roads than expected. Both environmental factors and the history of human impact are needed to explain the spatial distribution of CHI habitats. The overrepresentation of WKHs in parts of the forest landscapes represents a good starting point to develop more efficient inventory methods.

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Nutrients, Vol. 8, Pages 18: The Economic Impact of Lower Protein Infant Formula for the Children of Overweight and Obese Mothers

The global prevalence of obesity is rising rapidly, highlighting the importance of understanding risk factors related to the condition. Childhood obesity, which has itself become increasingly prevalent, is an important predictor of adulthood obesity. Studies suggest that the protein content consumed in infanthood is an important predictor of weight gain in childhood, which may contribute to higher body mass index (BMI). For instance, there is evidence that a lower protein infant formula (lpIF) for infants of overweight or obese mothers can offer advantages over currently-used infant formulas with regard to preventing excessive weight gain. The current study used health economic modelling to predict the long-term clinical and economic outcomes in Mexico associated with lpIF compared to a currently-used formula. A discrete event simulation was constructed to extrapolate the outcomes of trials on the use of formula in infanthood to changes in lifetime BMI, the health outcomes due to the changes in BMI and the healthcare system costs, productivity and quality of life impact associated with these outcomes. The model predicts that individuals who receive lpIF in infancy go on to have lower BMI levels throughout their lives, are less likely to be obese or develop obesity-related disease, live longer, incur fewer health system costs and have improved productivity. Simulation-based economic modelling suggests that the benefits seen in the short term, with the use of lpIF over a currently-used formula, could translate into considerable health and economic benefits in the long term. Modelling over such long timeframes is inevitably subject to uncertainty. Further research should be undertaken to improve the certainty of the model.

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Nutrients, Vol. 8, Pages 8: Concepts and Controversies in Evaluating Vitamin K Status in Population-Based Studies

A better understanding of vitamin K's role in health and disease requires the assessment of vitamin K nutritional status in population and clinical studies. This is primarily accomplished using dietary questionnaires and/or biomarkers. Because food composition databases in the US are most complete for phylloquinone (vitamin K1, the primary form in Western diets), emphasis has been on phylloquinone intakes and associations with chronic diseases. There is growing interest in menaquinone (vitamin K2) intakes for which the food composition databases need to be expanded. Phylloquinone is commonly measured in circulation, has robust quality control schemes and changes in response to phylloquinone intake. Conversely, menaquinones are generally not detected in circulation unless large quantities are consumed. The undercarboxylated fractions of three vitamin K-dependent proteins are measurable in circulation, change in response to vitamin K supplementation and are modestly correlated. Since different vitamin K dependent proteins are implicated in different diseases the appropriate vitamin K-dependent protein biomarker depends on the outcome under study. In contrast to other nutrients, there is no single biomarker that is considered a gold-standard measure of vitamin K status. Most studies have limited volume of specimens. Strategic decisions, guided by the research question, need to be made when deciding on choice of biomarkers.

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Nutrients, Vol. 8, Pages 9: Low Calorie Beverage Consumption Is Associated with Energy and Nutrient Intakes and Diet Quality in British Adults

It is unclear whether consumption of low-calorie beverages (LCB) leads to compensatory consumption of sweet foods, thus reducing benefits for weight control or diet quality. This analysis investigated associations between beverage consumption and energy intake and diet quality of adults in the UK National Diet and Nutrition Survey (NDNS) (2008–2011; n = 1590), classified into: (a) non-consumers of soft drinks (NC); (b) LCB consumers; (c) sugar-sweetened beverage (SSB) consumers; or (d) consumers of both beverages (BB), based on 4-day dietary records. Within-person data on beverage consumption on different days assessed the impact on energy intake. LCB consumers and NC consumed less energy and non-milk extrinsic sugars than other groups. Micronutrient intakes and food choices suggested higher dietary quality in NC/LCB consumers compared with SSB/BB consumers. Within individuals on different days, consumption of SSB, milk, juice, and alcohol were all associated with increased energy intake, while LCB and tea, coffee or water were associated with no change; or reduced energy intake when substituted for caloric beverages. Results indicate that NC and LCB consumers tend to have higher quality diets compared with SSB or BB consumers and do not compensate for sugar or energy deficits by consuming more sugary foods.

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Nutrients, Vol. 8, Pages 13: Association between Blood Omega-3 Index and Cognition in Typically Developing Dutch Adolescents

The impact of omega-3 long-chain polyunsaturated fatty acids (LCPUFAs) on cognition is heavily debated. In the current study, the possible association between omega-3 LCPUFAs in blood and cognitive performance of 266 typically developing adolescents aged 13–15 years is investigated. Baseline data from Food2Learn, a double-blind and randomized placebo controlled krill oil supplementation trial in typically developing adolescents, were used for the current study. The Omega-3 Index was determined with blood from a finger prick. At baseline, participants finished a neuropsychological test battery consisting of the Letter Digit Substitution Test (LDST), D2 test of attention, Digit Span Forward and Backward, Concept Shifting Test and Stroop test. Data were analyzed with multiple regression analyses with correction for covariates. The average Omega-3 Index was 3.83% (SD 0.60). Regression analyses between the Omega-3 Index and the outcome parameters revealed significant associations with scores on two of the nine parameters. The association between the Omega-3 Index and both scores on the LDST (β = 0.136 and p = 0.039), and the number of errors of omission on the D2 (β = −0.053 and p = 0.007). This is a possible indication for a higher information processing speed and less impulsivity in those with a higher Omega-3 Index.

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Nutrients, Vol. 8, Pages 5: Magnesium Levels in Drinking Water and Coronary Heart Disease Mortality Risk: A Meta-Analysis

Epidemiological studies have demonstrated inconsistent associations between drinking water magnesium levels and risk of mortality from coronary heart disease (CHD); thus, a meta-analysis was performed to assess the association between them. Relevant studies were searched by the databases of Cochrane, EMBASE, PubMed and Web of Knowledge. Pooled relative risks (RR) with their 95% CI were calculated to assess this association using a random-effects model. Finally, nine articles with 10 studies involving 77,821 CHD cases were used in this study. Our results revealed an inverse association between drinking water magnesium level and CHD mortality (RR = 0.89, 95% CI = 0.79–0.99, I2 = 70.6). Nine of the 10 studies came from Europe, and the association was significant between drinking water magnesium level and the risk of CHD mortality (RR = 0.83, 95% CI = 0.69–0.98). In conclusion, drinking water magnesium level was significantly inversely associated with CHD mortality.

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Water, Vol. 8, Pages 14: Quantifying Rainfall Interception Loss of a Subtropical Broadleaved Forest in Central Taiwan

The factors controlling seasonal rainfall interception loss are investigated by using a double-mass curve analysis, based on direct measurements of high-temporal resolution gross rainfall, throughfall and stemflow from 43 rainfall events that occurred in central Taiwan from April 2008 to April 2009. The canopy water storage capacity for the wet season was estimated to be 1.86 mm, about twice that for the dry season (0.91 mm), likely due to the large reduction in the leaf area index (LAI) from 4.63 to 2.23 (m2·m−2). Changes in seasonal canopy structure and micro-meteorological conditions resulted in temporal variations in the amount of interception components, and rainfall partitioning into stemflow and throughfall. Wet canopy evaporation after rainfall contributed 41.8% of the wet season interception loss, but only 17.1% of the dry season interception loss. Wet canopy evaporation during rainfall accounted for 82.9% of the dry season interception loss, but only 58.2% of the wet season interception loss. Throughfall accounted for over 79.7% of the dry season precipitation and 76.1% of the wet season precipitation, possibly due to the change in gap fraction from 64.2% in the dry season to 50.0% in the wet season. The reduced canopy cover in the dry season also produced less stemflow than that of the wet season. The rainfall stemflow ratio ( P s f / P g ) was reduced from 12.6% to 8.9%. Despite relatively large changes in canopy structure, seasonal variation of the ratio of rainfall partitioned to interception was quite small. Rainfall interception loss accounted for nearly 12% of gross precipitation for both dry and wet seasons.

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Fermentation, Vol. 2, Pages 2: Chemical Analysis of the Sugar Moiety of Monohexosylceramide Contained in Koji, Japanese Traditional Rice Fermented with Aspergillus

Koji, rice fermented with Aspergillus, is used for saccharification of starch contained in crops during the manufacturing of many of Japanese traditional foods and drinks. Japanese people have long eaten koji, and many beneficial substances have been reported to be contained in koji. However, there has been no report on the existence or content of galactosylceramide in koji. To address this issue, we analyzed the chemical composition of the sugar moiety of monohexosylceramide contained in koji, and elucidate that 30.3% of yellow koji is galactosylceramide, 69.7% of that is glucosylceramide, 19.2% of white koji is galactosylceramide, and 80.8% of that is glucosylceramide. This is the first report of the existence and content of galactosylceramide in koji.

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Forests, Vol. 7, Pages 12: Propagation of Native Tree Species to Restore Subtropical Evergreen Broad-Leaved Forests in SW China

Subtropical evergreen broad-leaved forest (EBLF) is a widespread vegetation type throughout East Asia that has suffered extensive deforestation and fragmentation. Selection and successful propagation of native tree species are important for improving ecological restoration of these forests. We carried out a series of experiments to study the propagation requirements of indigenous subtropical tree species in Southwest China. Seeds of 21 tree species collected from the natural forest were materials for the experiment. This paper examines the seed germination and seedling growth performance of these species in a nursery environment. Germination percentages ranged from 41% to 96% and were ≥50% for 19 species. The median length of germination time (MLG) ranged from 24 days for Padus wilsonii to 144 days for Ilex polyneura. Fifteen species can reach the transplant size (≥15 cm in height) within 12 months of seed collection. Nursery-grown seedlings for each species were planted in degraded site. Two years after planting, the seedling survival rate was >50% in 18 species and >80% in 12 species. Based on these results, 17 species were recommended as appropriate species for nursery production in forest restoration projects. Our study contributes additional knowledge regarding the propagation techniques for various native subtropical tree species in nurseries for forest restoration.

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Water, Vol. 8, Pages 13: The Acoustic Properties of Suspended Sediment in Large Rivers: Consequences on ADCP Methods Applicability

The use of echo-levels from Acoustic Doppler Current Profiler (ADCP) recordings has become more and more common for estimating suspended bed-material and wash loads in rivers over the last decade. Empirical, semi-empirical and physical-based acoustic methods have been applied in different case studies, which provided relationships between scattering particles features derived from samples (i.e., concentration and grain size) and corresponding backscattering strength and sound attenuation. These methods entail different assumptions regarding sediment heterogeneity in the ensonified volume (e.g., particle size distribution (PSD) and spatial concentration gradient). Our work was to compare acoustic backscatter and attenuation properties of suspended sediments, sampled in the rivers Parana and Danube that represented rather different hydro-sedimentological conditions during the surveys. The Parana represents a large sandy river, characterized through a huge watershed and the typical bimodal PSD of sediment in suspension, while the Danube represents in the investigated reach an exposed sand-gravel bed and clay-silt particles transported in the water column in suspension. Sand and clay-silt concentrations clearly dominate the analyzed backscattering strength in the rivers Parana and Danube, respectively, with an effect of PSD level of sorting in the latter case. This comparison clarifies the extent of assumptions made, eventually advising on the actual possibility of applying certain ADCP methods, depending on the expected concentration gradients and PSD of suspended sediment to be investigated.

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Water, Vol. 8, Pages 12: Integration of a Three-Dimensional Process-Based Hydrological Model into the Object Modeling System

The integration of a spatial process model into an environmental modeling framework can enhance the model's capabilities. This paper describes a general methodology for integrating environmental models into the Object Modeling System (OMS) regardless of the model's complexity, the programming language, and the operating system used. We present the integration of the GEOtop model into the OMS version 3.0 and illustrate its application in a small watershed. OMS is an environmental modeling framework that facilitates model development, calibration, evaluation, and maintenance. It provides innovative techniques in software design such as multithreading, implicit parallelism, calibration and sensitivity analysis algorithms, and cloud-services. GEOtop is a physically based, spatially distributed rainfall-runoff model that performs three-dimensional finite volume calculations of water and energy budgets. Executing GEOtop as an OMS model component allows it to: (1) interact directly with the open-source geographical information system (GIS) uDig-JGrass to access geo-processing, visualization, and other modeling components; and (2) use OMS components for automatic calibration, sensitivity analysis, or meteorological data interpolation. A case study of the model in a semi-arid agricultural catchment is presented for illustration and proof-of-concept. Simulated soil water content and soil temperature results are compared with measured data, and model performance is evaluated using goodness-of-fit indices. This study serves as a template for future integration of process models into OMS.

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Sensors, Vol. 16, Pages 29: Energy Efficient Moving Target Tracking in Wireless Sensor Networks

Moving target tracking in wireless sensor networks is of paramount importance. This paper considers the problem of state estimation for L-sensor linear dynamic systems. Firstly, the paper establishes the fuzzy model for measurement condition estimation. Then, Generalized Kalman Filter design is performed to incorporate the novel neighborhood function and the target motion information, improving with an increasing number of active sensors. The proposed measurement selection approach has some advantages in time cost. As such, if the desired accuracy has been achieved, the parameter initialization for optimization can be readily resolved, which maximizes the expected lifespan while preserving tracking accuracy. Through theoretical justifications and empirical studies, we demonstrate that the proposed scheme achieves substantially superior performances over conventional methods in terms of moving target tracking under the resource-constrained wireless sensor networks.

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Sensors, Vol. 16, Pages 33: Wireless Sensors Grouping Proofs for Medical Care and Ambient Assisted-Living Deployment

Internet of Things (IoT) devices are rapidly penetrating e-health and assisted living domains, and an increasing proportion among them goes on the account of computationally-weak devices, where security and privacy provisioning alone are demanding tasks, not to mention grouping proofs. This paper, therefore, gives an extensive analysis of such proofs and states lessons learnt to avoid possible pitfalls in future designs. It sticks with prudent engineering techniques in this field and deploys in a novel way the so called non-deterministic principle to provide not only grouping proofs, but (among other) also privacy. The developed solution is analyzed by means of a tangible metric and it is shown to be lightweight, and formally for security.

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Sensors, Vol. 16, Pages 32: Secure and Efficient Reactive Video Surveillance for Patient Monitoring

Video surveillance is widely deployed for many kinds of monitoring applications in healthcare and assisted living systems. Security and privacy are two promising factors that align the quality and validity of video surveillance systems with the caliber of patient monitoring applications. In this paper, we propose a symmetric key-based security framework for the reactive video surveillance of patients based on the inputs coming from data measured by a wireless body area network attached to the human body. Only authenticated patients are able to activate the video cameras, whereas the patient and authorized people can consult the video data. User and location privacy are at each moment guaranteed for the patient. A tradeoff between security and quality of service is defined in order to ensure that the surveillance system gets activated even in emergency situations. In addition, the solution includes resistance against tampering with the device on the patient's side.

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IJERPH, Vol. 13, Pages 96: Removal of Fecal Indicators, Pathogenic Bacteria, Adenovirus, Cryptosporidium and Giardia (oo)cysts in Waste Stabilization Ponds in Northern and Eastern Australia

Maturation ponds are used in rural and regional areas in Australia to remove the microbial loads of sewage wastewater, however, they have not been studied intensively until present. Using a combination of culture-based methods and quantitative real-time PCR, we assessed microbial removal rates in maturation ponds at four waste stabilization ponds (WSP) with (n = 1) and without (n = 3) baffles in rural and remote communities in Australia. Concentrations of total coliforms, E. coli, enterococci, Campylobacter spp., Salmonella spp., F+ RNA coliphage, adenovirus, Cryptosporidium spp. and Giardia (oo) cysts in maturation ponds were measured at the inlet and outlet. Only the baffled pond demonstrated a significant removal of most of the pathogens tested and therefore was subjected to further study by analyzing E. coli and enterococci concentrations at six points along the baffles over five sampling rounds. Using culture-based methods, we found a decrease in the number of E. coli and enterococci from the initial values of 100,000 CFU per 100 mL in the inlet samples to approximately 1000 CFU per 100 mL in the outlet samples for both bacterial groups. Giardia cysts removal was relatively higher than fecal indicators reduction possibly due to sedimentation.

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Whole Mount Dissection and Immunofluorescence of the Adult Mouse Cochlea

We present a method to isolate the adult organ of Corti as three intact cochlear turns (apex, middle, and base). We also demonstrate a procedure for immunostaining with fluorescently tagged antibodies. Together these techniques allow the study of hair cells, supporting cells, and other cell types found in the cochlea.

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A Simple Method for Automated Solid Phase Extraction of Water Samples for Immunological Analysis of Small Pollutants

A protocol for the extraction and pre-concentration of estradiol from water samples by using an automated and miniaturized system is presented.

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Anti-virulent Disruption of Pathogenic Biofilms using Engineered Quorum-quenching Lactonases

Quorum-quenching enzymes are anti-virulent and anti-bacterial options that can mitigate pathogenesis without risk of incurring resistance, by preventing the expression of virulence factors and genes associated with antibiotic resistance and biofilm formation. In this study, we report a method that demonstrates the efficacy of quorum-quenching enzymes in bacterial biofilm disruption.

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