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Τρίτη 23 Φεβρουαρίου 2016

New nodes and edges in the glucosinolate molecular network revealed by proteomics and metabolomics of Arabidopsis myb28/29 and cyp79B2/B3 glucosinolate mutants

Publication date: Available online 23 February 2016
Source:Journal of Proteomics
Author(s): Islam Mostafa, Ning Zhu, Mi-Jeong Yoo, Kelly M. Balmant, Biswapriya B. Misra, Craig Dufresne, Maged Abou-Hashem, Sixue Chen, Maher El-Domiaty
Glucosinolates present in Brassicales are important for human health and plant defense against insects and pathogens. Here we investigate the proteomes and metabolomes of Arabidopsis myb28/29 and cyp79B2/B3 mutants deficient in aliphatic glucosinolates and indolic glucosinolates, respectively. Quantitative proteomics of the myb28/29 and cyp79B2/B3 mutants led to the identification of 2785 proteins, of which 142 proteins showed significant changes in the two mutants compared to wild type (WT). By mapping the differential proteins using STRING, we detected 59 new edges in the glucosinolate metabolic network. These connections can be classified as primary with direct roles in glucosinolate metabolism, secondary related to plant stress responses, and tertiary involved in other biological processes. Gene Ontology analysis of the differential proteins showed high level of enrichment in the nodes belonging to metabolic process including glucosinolate biosynthesis and response to stimulus. Using metabolomics, we quantified 292 metabolites covering a broad spectrum of metabolic pathways, and 89 exhibited differential accumulation patterns between the mutants and WT. The changing metabolites (e.g., γ-glutamyl amino acids, auxins and glucosinolate hydrolysis products) complement our proteomics findings. This study contributes toward engineering and breeding of glucosinolate profiles in plants in efforts to improve human health, crop quality and productivity.Biological significanceGlucosinolates in Brassicales constitute an important group of natural metabolites important for plant defense and human health. Its biosynthetic pathways and transcriptional regulation have been well-studied. Using Arabidopsis mutants of important genes in glucosinolate biosynthesis, quantitative proteomics and metabolomics led to identification of many proteins and metabolites that are potentially related to glucosinolate metabolism. This study provides a comprehensive insight into the molecular networks of glucosinolate metabolism, and will facilitate efforts toward engineering and breeding of glucosinolate profiles for enhanced crop defense, and nutritional value.

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Opportunities for wheat proteomics to discover the biomarkers for respiration-dependent biomass production, stress tolerance and cytoplasmic male sterility

Publication date: Available online 23 February 2016
Source:Journal of Proteomics
Author(s): Richard P. Jacoby, A. Harvey Millar, Nicolas L. Taylor
Wheat has served as a key species for characterising fundamental aspects of mitochondrial biochemistry and respiratory physiology. Respiratory traits are linked to many important agronomic properties, so identifying the proteins that carry out these molecular processes would define a new set of targets for wheat breeding. To date, systematic proteomic investigations into wheat mitochondria have lagged behind other species, due to the size and complexity of the wheat genome. However this situation is changing with new sequence data increasing the power of proteomics applied to wheat. In this review, we argue that the impact of wheat mitochondrial proteomics on wheat respiratory traits can be improved through integrating data from current proteomics approaches with knowledge from the wheat respiration literature. We present a historical overview of biochemical and physiological studies of mitochondrial respiration in wheat, highlighting respiratory properties linked to agronomically important traits, such as biomass production, stress tolerance and cytoplasmic male sterility. Also, we summarise the current status of the wheat mitochondrial proteome and present a predicted set of 2000 probable mitochondrial proteins from Triticum urartu. Finally, we present a set of strategies outlining how future proteomics experiments can be applied to wheat mitochondria, by targeting studies to build on pre-existing knowledge.

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iTRAQ-based comparative proteomic analysis of excretory–secretory proteins of schistosomula and adult worms of Schistosoma japonicum

Publication date: Available online 23 February 2016
Source:Journal of Proteomics
Author(s): Xiaodan Cao, Zhiqiang Fu, Min Zhang, Yanhui Han, Hongxiao Han, Qian Han, Ke Lu, Yang Hong, Jiaojiao Lin
Schistosomiasis remains a serious public health problem with 200 million people infected and 779 million people at risk worldwide. The schistosomulum and adult worm are two stages of the complex lifecycle of Schistosoma japonicum and excretory/secretory proteins (ESPs) play a major role in host–parasite interactions. In this study, iTRAQ-coupled LC–MS/MS was used to investigate the proteome of ESPs obtained from schistosomula and adult worms of S. japonicum, and 298 differential ESPs were identified. Bioinformatics analysis of differential ESPs in the two developmental stages showed that 161 ESPs upregulated in schistosomula were associated with stress responses, carbohydrate metabolism and protein degradation, whereas ESPs upregulated in adult worms were mainly related to immunoregulation and purine metabolism. Recombinant heat shock protein 70 (HSP70) and thioredoxin peroxidase (TPx), two differential proteins identified in this study, were expressed. Further studies showed that rSjHSP70 and rSjTPx stimulated macrophages expressing high levels of the anti-inflammatory factors TGF-β, IL-10 and Arg-1, and suppressed the expression of the pro-inflammatory cytokines TNF-α, IL-1β, IL-6 and iNOS in LPS-induced macrophages. This study provides new insights into the survival and development of schistosomes in the final host and helps identify vaccine candidates or new diagnostic reagents for schistosomiasis.

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Energy expenditure in critically ill patients estimated by population-based equations, indirect calorimetry and CO2-based indirect calorimetry

Indirect calorimetry (IC) is the reference method for measurement of energy expenditure (EE) in mechanically ventilated critically ill patients. When IC is unavailable, EE can be calculated by predictive equat...

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Hemodynamic monitoring in the era of digital health

Digital innovations are changing medicine, and hemodynamic monitoring will not be an exception. Five to ten years from now, we can envision a world where clinicians will learn hemodynamics with simulators and ...

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Experts’ recommendations for the management of cardiogenic shock in children

Cardiogenic shock which corresponds to an acute state of circulatory failure due to impairment of myocardial contractility is a very rare disease in children, even more than in adults. To date, no internationa...

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The occlusion tests and end-expiratory esophageal pressure: measurements and comparison in controlled and assisted ventilation

Esophageal pressure is used as a reliable surrogate of the pleural pressure. It is conventionally measured by an esophageal balloon placed in the lower part of the esophagus. To validate the correct position ...

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Factors associated with initiation of medical advanced cardiac life support after out-of-hospital cardiac arrest

Termination of resuscitation rule permits to stop futile resuscitative efforts by paramedics. In a different setting, the decision to withhold resuscitation by emergency physician could be based on different f...

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IJMS, Vol. 17, Pages 267: The Protective Role of the TOPK/PBK Pathway in Myocardial Ischemia/Reperfusion and H2O2-Induced Injury in H9C2 Cardiomyocytes

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T-LAK-cell-originated protein kinase (TOPK) is a PDZ-binding kinase (PBK) that was recently identified as a novel member of the mitogen-activated protein kinase (MAPK) family. It has been shown to play an important role in many cellular functions. However, its role in cardiac function remains unclear. Thus, we have herein explored the biological function of TOPK in myocardial ischemia/reperfusion (I/R) and oxidative stress injury in H9C2 cardiomyocytes. I/R and ischemic preconditioning (IPC) were induced in rats by 3-hour reperfusion after 30-min occlusion of the left anterior descending coronary artery and by 3 cycles of 5-min I/R. Hydrogen peroxide (H2O2) was used to induce oxidative stress in H9C2 cardiomyocytes. TOPK expression was analyzed by western blotting, RT-PCR, immunohistochemical staining, and immunofluorescence imaging studies. The effects of TOPK gene overexpression and its inhibition via its inhibitor HI-TOPK-032 on cell viability and Bcl-2, Bax, ERK1/2, and p-ERK1/2 protein expression were analyzed by MTS assay and western blotting, respectively. The results showed that IPC alleviated myocardial I/R injury and induced TOPK activation. Furthermore, H2O2 induced TOPK phosphorylation in a time-dependent manner. Interestingly, TOPK inhibition aggravated the H2O2-induced oxidative stress injury in myocardiocytes, whereas overexpression relieved it. In addition, the ERK pathway was positively regulated by TOPK signaling. In conclusion, our results indicate that TOPK might mediate a novel survival signal in myocardial I/R, and that its effect on anti-oxidative stress involves the ERK signaling pathway.

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Technologies, Vol. 4, Pages 7: Drilling of Copper Using a Dual-Pulse Femtosecond Laser

The drilling of copper using a dual-pulse femtosecond laser with wavelength of 800 nm, pulse duration of 120 fs and a variable pulse separation time (0.1–150 ps) is investigated theoretically. A one-dimensional two-temperature model with temperature-dependent material properties is considered, including dynamic optical properties and the thermal-physical properties. Rapid phase change and phase explosion models are incorporated to simulate the material ablation process. Numerical results show that under the same total laser fluence of 4 J/cm2, a dual-pulse femtosecond laser with a pulse separation time of 30–150 ps can increase the ablation depth, compared to the single pulse. The optimum pulse separation time is 85 ps. It is also demonstrated that a dual pulse with a suitable pulse separation time for different laser fluences can enhance the ablation rate by about 1.6 times.

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Molecules, Vol. 21, Pages 258: Typical Monoterpenes as Insecticides and Repellents against Stored Grain Pests

Five monoterpenes naturally occurring in essential oils were tested for their insecticidal and repellent activities against the bruchid beetle Callosobruchus maculatus and the maize weevil Sitophilus zeamais. The monoterpenes were highly efficient as inducers of mortality or repellency against both insect species. They were more efficient in their fumigant activity against C. maculatus than against S. zeamais, while this profile of action was inverted when considering the repellent activities. Eugenol was one the most effective fumigants against both insects and one the most effective repellent against C. maculatus, while citronellal and geranial were one the most effective repellents against S. zeamais. Functional and positional isomerism of the monoterpenes pairs appears to exert little or no influence on theirs effects, especially in case of repellency. The validation of the insecticidal/repellent efficacy of isolated monoterpenes may permit a more advantageous, rapid, economic and optimized approach to the identification of promising oils for commercial formulations when combined with ethnobotanical strategies.

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Metals, Vol. 6, Pages 43: Temperature Effects on the Tensile Properties of Precipitation-Hardened Al-Mg-Cu-Si Alloys

Because the mechanical performance of precipitation-hardened alloys can be significantly altered with temperature changes, understanding and predicting the effects of temperatures on various mechanical properties for these alloys are important. In the present work, an analytical model has been developed to predict the elastic modulus, the yield stress, the failure stress, and the failure strain taking into consideration the effect of temperatures for precipitation-hardenable Al-Mg-Cu-Si Alloys (Al-A319 alloys). In addition, other important mechanical properties of Al-A319 alloys including the strain hardening exponent, the strength coefficient, and the ductility parameter can be estimated using the current model. It is demonstrated that the prediction results based on the proposed model are in good agreement with those obtained experimentally in Al-A319 alloys in the as-cast condition and after W and T7 heat treatments.

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Entropy, Vol. 18, Pages 65: New Lagrange Multipliers for the Blind Adaptive Deconvolution Problem Applicable for the Noisy Case

Recently, a new blind adaptive deconvolution algorithm was proposed based on a new closed-form approximated expression for the conditional expectation (the expectation of the source input given the equalized or deconvolutional output) where the output and input probability density function (pdf) of the deconvolutional process were approximated with the maximum entropy density approximation technique. The Lagrange multipliers for the output pdf were set to those used for the input pdf. Although this new blind adaptive deconvolution method has been shown to have improved equalization performance compared to the maximum entropy blind adaptive deconvolution algorithm recently proposed by the same author, it is not applicable for the very noisy case. In this paper, we derive new Lagrange multipliers for the output and input pdfs, where the Lagrange multipliers related to the output pdf are a function of the channel noise power. Simulation results indicate that the newly obtained blind adaptive deconvolution algorithm using these new Lagrange multipliers is robust to signal-to-noise ratios (SNR), unlike the previously proposed method, and is applicable for the whole range of SNR down to 7 dB. In addition, we also obtain new closed-form approximated expressions for the conditional expectation and mean square error (MSE).

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Applied Sciences, Vol. 6, Pages 62: Comfort and Functional Properties of Far-Infrared/Anion-Releasing Warp-Knitted Elastic Composite Fabrics Using Bamboo Charcoal, Copper, and Phase Change Materials

Elastic warp-knitted composite fabrics with far-infrared emissivity and an anion-releasing property were prepared using bamboo charcoal (BC), copper (Cu), and phase-change material (PCM). The functional composite fabric, which was composed of self-made complex yarns with various twisting degrees and material composition, were created using a rotor twister and ring-spinning technique. The fabric structure was diversified by the feeding modes of weft yarn into a crochet-knitting machine. The twist number of complex yarns was optimized by tensile tenacity, twist contraction, and hairiness, and analysis showed that twisting at 12 twists per inch produced the highest tensile tenacity and appropriate twist contraction and hairiness. Comfort evaluation showed that the elastic composite fabrics with BC weft yarns exhibited higher water–vapor transmission rate and air permeability, reaching 876 g/m2∙ day and 73.2 cm3/s/cm2, respectively. Three structures of composite fabric with various weft yarns had >0.85 ε far-infrared emissivity and 350–420 counts/cm3 anion amount. The prepared elastic warp-knitted fabrics can provide a comfortable, dry, and breathable environment to the wearer and can thus be applied as health-care textiles in the future.

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Viruses, Vol. 8, Pages 55: Identification and Comparison of Receptor Binding Characteristics of the Spike Protein of Two Porcine Epidemic Diarrhea Virus Strains

Porcine epidemic diarrhea virus (PEDV), a member of Alphacoronavirus, has caused huge economic losses for the global pork industry recently. The spike (S) protein mediates PEDV entry into host cells. Herein, we investigated the interactions between the S protein and its receptor porcine aminopeptidase N (pAPN) or co-receptor sugars. The C-terminal domain (CTD) of the S1 domain is bound to pAPN. The prototype strain demonstrated similar receptor-binding activity compared with the variant field isolate. Three loops at the tips of the β-barrel domains did not play crucial roles in the PEDV S-pAPN association, indicating that PEDV conforms to a different receptor recognition model compared with transmissible gastroenteritis virus (TGEV), porcine respiratory CoV (PRCV), and human coronavirus NL63 (HCoV-NL63). The N-terminal domain (NTD) of the PEDV S1 domain could bind sugar, a possible co-receptor for PEDV. The prototype strain exhibited weaker sugar-binding activity compared with the variant field isolate. Strategies targeting the receptor binding domain (RBD) may be helpful for developing vaccines or antiviral drugs for PEDV. Understanding the differences in receptor binding between the prototype and the variant strains may provide insight into PEDV pathogenesis.

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Metals, Vol. 6, Pages 41: Picosecond Laser Shock Peening of Nimonic 263 at 1064 nm and 532 nm Wavelength

The paper presents a study on the surface modifications of nickel based superalloy Nimonic 263 induced by laser shock peening (LSP) process. The process was performed by Nd3+:Yttrium Aluminium Garnet (YAG) picosecond laser using the following parameters: pulse duration 170 ps; repetition rate 10 Hz; pulse numbers of 50, 100 and 200; and wavelength of 1064 nm (with pulse energy of 2 mJ, 10 mJ and 15 mJ) and 532 nm (with pulse energy of 25 mJ, 30 mJ and 35 mJ). The following response characteristics were analyzed: modified surface areas obtained by the laser/material interaction were observed by scanning electron microscopy; elemental composition of the modified surface was evaluated by energy-dispersive spectroscopy (EDS); and Vickers microhardness tests were performed. LSP processing at both 1064 nm and 532 nm wavelengths improved the surface structure and microhardness of a material. Surface morphology changes of the irradiated samples were determined and surface roughness was calculated. These investigations are intended to contribute to the study on the level of microstructure and mechanical properties improvements due to LSP process that operate in a picosecond regime. In particular, the effects of laser wavelength on the microstructural and mechanical changes of a material are studied in detail.

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Remote Sensing, Vol. 8, Pages 164: Spectral Reflectance of Palauan Reef-Building Coral with Different Symbionts in Response to Elevated Temperature

Spectral reflectance patterns of corals are driven largely by the pigments of photosynthetic symbionts within the host cnidarian. The warm inshore bays and cooler offshore reefs of Palau share a variety of coral species with differing endosymbiotic dinoflagellates (genus: Symbiodinium), with the thermally tolerant Symbiodinium trenchii (S. trenchii) (= type D1a or D1-4) predominating under the elevated temperature regimes inshore, and primarily Clade C types in the cooler reefs offshore. Spectral reflectance of two species of stony coral, Cyphastrea serailia (C. serailia) and Pachyseris rugosa (P. rugosa), from both inshore and offshore locations shared multiple features both between sites and to similar global data from other studies. No clear reflectance features were evident which might serve as markers of thermally tolerant S. trenchii symbionts compared to the same species of coral with different symbionts. Reflectance from C. serailia colonies from inshore had a fluorescence peak at approximately 500 nm which was absent from offshore animals. Integrated reflectance across visible wavelengths had an inverse correlation to symbiont cell density and could be used as a relative indicator of the symbiont abundance for each type of coral. As hypothesized, coral colonies from offshore with Clade C symbionts showed a greater response to experimental heating, manifested as decreased symbiont density and increased reflectance or "bleaching" than their inshore counterparts with S. trenchii. Although no unique spectral features were found to distinguish species of symbiont, spectral differences related to the abundance of symbionts could prove useful in field and remote sensing studies.

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Econometrics, Vol. 4, Pages 8: Volatility Forecasting: Downside Risk, Jumps and Leverage Effect

We provide empirical evidence of volatility forecasting in relation to asymmetries present in the dynamics of both return and volatility processes. Using recently-developed methodologies to detect jumps from high frequency price data, we estimate the size of positive and negative jumps and propose a methodology to estimate the size of jumps in the quadratic variation. The leverage effect is separated into continuous and discontinuous effects, and past volatility is separated into "good" and "bad", as well as into continuous and discontinuous risks. Using a long history of the S & P500 price index, we find that the continuous leverage effect lasts about one week, while the discontinuous leverage effect disappears after one day. "Good" and "bad" continuous risks both characterize the volatility persistence, while "bad" jump risk is much more informative than "good" jump risk in forecasting future volatility. The volatility forecasting model proposed is able to capture many empirical stylized facts while still remaining parsimonious in terms of the number of parameters to be estimated.

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Sensors, Vol. 16, Pages 269: An Attachable Electromagnetic Energy Harvester Driven Wireless Sensing System Demonstrating Milling-Processes and Cutter-Wear/Breakage-Condition Monitoring

An attachable electromagnetic-energy-harvester driven wireless vibration-sensing system for monitoring milling-processes and cutter-wear/breakage-conditions is demonstrated. The system includes an electromagnetic energy harvester, three single-axis Micro Electro-Mechanical Systems (MEMS) accelerometers, a wireless chip module, and corresponding circuits. The harvester consisting of magnets with a coil uses electromagnetic induction to harness mechanical energy produced by the rotating spindle in milling processes and consequently convert the harnessed energy to electrical output. The electrical output is rectified by the rectification circuit to power the accelerometers and wireless chip module. The harvester, circuits, accelerometer, and wireless chip are integrated as an energy-harvester driven wireless vibration-sensing system. Therefore, this completes a self-powered wireless vibration sensing system. For system testing, a numerical-controlled machining tool with various milling processes is used. According to the test results, the system is fully self-powered and able to successfully sense vibration in the milling processes. Furthermore, by analyzing the vibration signals (i.e., through analyzing the electrical outputs of the accelerometers), criteria are successfully established for the system for real-time accurate simulations of the milling-processes and cutter-conditions (such as cutter-wear conditions and cutter-breaking occurrence). Due to these results, our approach can be applied to most milling and other machining machines in factories to realize more smart machining technologies.

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Hydrology, Vol. 3, Pages 10: Comparison between Snow Albedo Obtained from Landsat TM, ETM+ Imagery and the SPOT VEGETATION Albedo Product in a Mediterranean Mountainous Site

Albedo plays an important role in snow evolution modeling quantifying the amount of solar radiation absorbed and reflected by the snowpack, especially in mid-latitude regions with semiarid conditions. Satellite remote sensing is the most extensive technique to determine the variability of snow albedo over medium to large areas; however, scale effects from the pixel size of the sensor source may affect the results of snow models, with different impacts depending on the spatial resolution. This work presents the evaluation of snow albedo values retrieved from (1) Landsat images, L (16-day frequency with 30 × 30 m pixel size) and (2) SPOT VEGETATION albedo products, SV (10-day frequency with 1 × 1 km pixel size) in the Sierra Nevada mountain range in South Spain, a Mediterranean site representative of highly heterogeneous conditions. Daily snow albedo map series were derived from both sources, and used as input for the snow module in the WiMMed (Watershed Integrated Management in Mediterranean Environment) hydrological model, which was operational at the study area for snow monitoring for two hydrological years, 2011–2012 and 2012–2013, in the Guadalfeo river basin in Sierra Nevada. The results showed similar albedo trends in both data sources, but with different values, the shift between both sources being distributed in space according to the altitude. This difference resulted in lower snow cover fraction values in the SV-simulations that affected the rest of snow variables included in the simulation. This underestimation, mainly due to the effects of mixed pixels composed by both snow and snow-free areas, produced higher divergences from both sources during the melting periods when the evapo-sublimation and melting fluxes are more relevant. Therefore, the selection of the albedo data source in these areas, where snow evapo-sublimation plays a very important role and the presence of snow-free patches is very frequent, can condition the final accuracy of the simulations of operational models; Landsat is the recommended source if the monitoring of the snowpack is the final goal of the modeling, whereas the SV product may be advantageous when water resource planning in the medium and long term is intended. Applications of large pixel size albedo sources need further assessment for short-term operational objectives.

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Administrative Sciences, Vol. 6, Pages 3: Is Self-Regulation Sufficient? Case of the German Transparency Code

The German pharmaceutical industry is stepping ahead with its implementation of a new transparency disclosure code for cooperation between pharmaceutical companies and health care professionals (HCPs) and health care organisations (HCOs). In Germany, this transparency code ("Transparenzkodex") is applicable since January 2015, and data will be publicly available around mid-2016. No empirical work has been done that addresses the impact of the transparency code on cooperation between HCPs, HCOs and the pharmaceutical companies, including the possibilities of competitive analysis of the available data. In this paper, we interviewed experts from 11 pharmaceutical companies representing small, medium-sized as well as multinational corporations which represent 80% of the German pharmaceutical market. Besides interviews, the authors designed a game to evaluate possible financial investments in key opinion leaders. The market can be regarded as a zero sum game. By allowing public identification of such key HCPs and HCOs, the amount spent on them might increase and not decrease. In a way, the transparency code may foster more and not less spending; in our simulation game, the financial investment in marketing key HCPs and HCOs exceeded sustainable limits.

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Compound Profiling and 3D-QSAR Studies of Hydrazone Derivatives with Activity Against Intracellular Trypanosoma cruzi

Publication date: Available online 23 February 2016
Source:Bioorganic & Medicinal Chemistry
Author(s): Lívia Bandeira Costa, Marcos Veríssimo de Oliveira Cardoso, Gevanio Bezerra de Oliveira Filho, Paulo André Teixeira de Moraes Gomes, José Wanderlan Pontes Espíndola, Thays Gabrielle de Jesus Silva, Pedro Henrique Monteiro Torres, Floriano Paes Silva Junior, Julio Martin, Regina Célia Bressan Queiroz de Figueiredo, Ana Cristina Lima Leite
Chagas disease is a tropical disease caused by the parasite Trypanosoma cruzi, which is endemic in Central and South America. Few treatments are available with effectiveness limited to the early (acute) stage of disease, significant toxicity and widespread drug resistance. In this work we report the outcome of a HTS-ready assay chemical library screen to identify novel, nontoxic, small-molecule inhibitors of T. cruzi. We have selected 50 compounds that possess hydrazone as a common group. The compounds were screened using recombinant T. cruzi (Tulahuen strain) expressing beta-galactosidase. A 3D quantitative structure–activity relationship (QSAR) analysis was performed using descriptors calculated from comparative molecular field analysis (CoMFA). Our findings show that of the fifty selected hydrazones, compounds LpQM-19, 28 and 31 displayed the highest activity against T. cruzi, leading to a selectivity index (SI) of 20-fold. The 3D-QSAR analysis indicates that a particular electrostatic arrangement, where electron-deficient atoms are aligned along the molecule main axis positively correlates with compound biological activity. These results provide new candidate molecules for the development of treatments against Chagas disease.

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Data on correlation between Aβ42 structural aggregation propensity and toxicity in bacteria

Publication date: June 2016
Source:Data in Brief, Volume 7
Author(s): Anita Carija, Susanna Navarro, Salvador Ventura
Protein aggregation and amyloid formation is a hallmark of an increasing number of human disorders. Because protein aggregation is deleterious for the cell physiology and results in a decrease in overall cell fitness, it is thought that natural selection acts to purify aggregating proteins during evolution. This data article contains complementary figures and results related to the research article entitled "Selection against toxic aggregation-prone protein sequences in bacteria" (Navarro et al., 2014) [1]. Here, we used the AGGRESCAN3D (A3D) server, a novel in house predictor that forecasts protein aggregation properties in protein structures to illustrate a striking correlation between the structure-based predictions of aggregation propensities for Alzheimer's Aβ42 peptide variants and their previously reported deleterious effects in bacteria.



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Quantitative super-resolution localization microscopy of DNA in situ using Vybrant® DyeCycle™ Violet fluorescent probe

Publication date: June 2016
Source:Data in Brief, Volume 7
Author(s): Dominika Żurek-Biesiada, Aleksander T. Szczurek, Kirti Prakash, Gerrit Best, Giriram K. Mohana, Hyun-Keun Lee, Jean-Yves Roignant, Jurek W. Dobrucki, Christoph Cremer, Udo Birk
Single Molecule Localization Microscopy (SMLM) is a recently emerged optical imaging method that was shown to achieve a resolution in the order of tens of nanometers in intact cells. Novel high resolution imaging methods might be crucial for understanding of how the chromatin, a complex of DNA and proteins, is arranged in the eukaryotic cell nucleus. Such an approach utilizing switching of a fluorescent, DNA-binding dye Vybrant® DyeCycle™ Violet has been previously demonstrated by us (Żurek-Biesiada et al., 2015) [1]. Here we provide quantitative information on the influence of the chemical environment on the behavior of the dye, discuss the variability in the DNA-associated signal density, and demonstrate direct proof of enhanced structural resolution. Furthermore, we compare different visualization approaches. Finally, we describe various opportunities of multicolor DNA/SMLM imaging in eukaryotic cell nuclei.



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Data on common variants associated with coronary artery disease/myocardial infarction in ethnic Arabs

Publication date: June 2016
Source:Data in Brief, Volume 7
Author(s): Salma M. Wakil, Ramesh Ram, Nzioka P. Muiya, Munish Mehta, Editha Andres, Nejat Mazhar, Batoul Baz, Samya Hagos, Maie Alshahid, Brian F. Meyer, Grant Morahan, Nduna Dzimiri
The data shows results acquired in a large cohort of 5668 ethnic Arabs involved in a common variants association study for coronary artery disease (CAD) and myocardial infarction (MI) using the Affymetrix Axiom Genotyping platform ("A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs" Wakil et al. (2015) [1] ). Several loci were described that conferred risk for CAD or MI, some of which were validated in an independent set of samples. Principal Component (PCA) analysis suggested that the Saudi Cohort was close to the CEU and TSI populations, thus pointing to similarity with European populations.



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Mass-spectrometry analysis of histone post-translational modifications in pathology tissue using the PAT-H-MS approach

Publication date: June 2016
Source:Data in Brief, Volume 7
Author(s): Roberta Noberini, Giancarlo Pruneri, Saverio Minucci, Tiziana Bonaldi
Aberrant histone post-translational modifications (hPTMs) have been implicated with various pathologies, including cancer, and may represent useful epigenetic biomarkers. The data described here provide a mass spectrometry-based quantitative analysis of hPTMs from formalin-fixed paraffin-embedded (FFPE) tissues, from which histones were extracted through the recently developed PAT-H-MS method. First, we analyzed FFPE samples from mouse spleen and liver or human breast cancer up to six years old, together with their corresponding fresh frozen tissue. We then combined the PAT-H-MS approach with a histone-focused version of the super-SILAC strategy-using a mix of histones from four breast cancer cell lines as a spike-in standard- to accurately quantify hPTMs from breast cancer specimens belonging to different subtypes. The data, which are associated with a recent publication (Pathology tissue-quantitative mass spectrometry analysis to profile histone post-translational modification patterns in patient samples (Noberini, 2015) [1]), are deposited at the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD002669.



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Shelf life stability comparison in air for solution processed pristine PDPP3T polymer and doped spiro-OMeTAD as hole transport layer for perovskite solar cell

Publication date: June 2016
Source:Data in Brief, Volume 7
Author(s): Ashish Dubey, Nirmal Adhikari, Swaminathan Venkatesan, Shaopeng Gu, Devendra Khatiwada, Qi Wang, Lal Mohammad, Mukesh Kumar, Qiquan Qiao
This data in brief includes forward and reverse scanned current density–voltage (J–V) characteristics of perovskite solar cells with PDPP3T and spiro-OMeTAD as HTL, stability testing conditions of perovskite solar cell shelf life in air for both PDPP3T and spiro-OMeTAD as HTL as per the description in Ref. [1], and individual J–V performance parameters acquired with increasing time exposed in ambient air are shown for both type of devices using PDPP3T and spiro-OMeTAD as HTL. The data collected in this study compares the device stability with time for both PDPP3T and spiro-OMeTAD based perovskite solar cells and is directly related to our research article "solution processed pristine PDPP3T polymer as hole transport layer for efficient perovskite solar cells with slower degradation" [2].



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Stroke Patients’ Speech Loss Linked to Loss of Brain Interconnections

The brain's macro architecture of connections can be reproduced as a "connectome" composed of nodes representing various regions of the brain and their edges, the connections between such nodes. Some of these nodes function as hubs, which are fundamental to the overall organization and distribution of information throughout the brain. When a network hub has an excess of interconnections, it is part of a so-called "rich club network." There is a growing body of evidence that damage to this rich club network can impair various speech and reading functions in much the same way as direct damage to brain regions normally associated with speech and comprehension.

This investigation involved 44 patients who had experienced a left hemisphere ischemic stroke at least six months prior to the study. Aphasia testing used the Western Aphasia Battery, which determined overall aphasia severity, as well as sub-assessments of speech fluency, auditory comprehension, speech repetition, and naming. Each participant was assigned an Aphasia Quotient (WAB-AQ) as a measure of severity. MRI Diffusion Tensor Imaging (MRI-DTI), which can map the interconnections between brain regions, was used to identify the rich club network in each individual patient.

Investigators found that when imaging revealed that the post-stroke patients studied had different distributions of rich club nodes, their aphasia could differ markedly. They present a striking example in which two patients had similar volumes of stroke damage but very dissimilar numbers of rich club nodes remaining nearby. Patient B had more severe aphasia (lower WAB-AQ = 23.6) than patient A (WAB-AB = 64.6).

Caption: Two representative participants were drawn from our sample to demonstrate the relationship between number of rich club nodes in each hemisphere and language performance. Despite comparable lesion volumes (A = 5796 voxels, B= 5614 voxels) and number of right-hemisphere rich club nodes, patient B – who had one isolated left-hemisphere rich club node – showed remarkably low language performance compared to patient A, who had fourteen nodes participation in the rich club on the left hemisphere.

"Subjects whose spared cortical language regions are integrated into the remaining network as rich club nodes are less likely to have more severe forms of aphasia," explained lead investigators Ezequiel Gleichgerrcht, MD, PhD, and Leonardo Bonilha, MD, PhD, from the Department of Neurology, Medical University of South Carolina.

While clinical practice has often focused on the direct damage to the grey matter of the brain, new mapping techniques such as MRI-DTI can examine the white matter connections throughout the brain. The investigators stressed that, "These findings further highlight the potential relevance and utility of mapping the neural connectome of individual subjects. Identifying patterns of white matter integrity has the potential to add valuable information to the well-established volume-based analysis of clinical, neuropsychological, and language outcomes from both theoretical and clinical perspectives."

#  #  #

NOTES FOR EDITORS

"Preservation of structural brain network hubs is associated with less severe post-stroke aphasia," by Ezequiel Gleichgerrcht, Madison Kocher, Travis Nesland, Chris Rorden, Julius Fridriksson and Leonardo Bonilha. Restorative Neurology and Neuroscience, Volume 34, Issue 1, DOI 10.3233/RNN-150511, published by IOS Press.

Full text of the article is available to credentialed journalists upon request. Contact Daphne Watrin, IOS Press at +31 20 688 3355 or d.watrin@iospress.nl. Journalists wishing to interview the authors should contact Ezequiel Gleichgerrcht at gleichge@musc.edu.

ABOUT RESTORATIVE NEUROLOGY AND NEUROSCIENCE (RNN)

An interdisciplinary journal under the editorial leadership of Bernhard Sabel, PhD, Restorative Neurology and Neuroscience publishes papers relating the plasticity and response of the nervous system to accidental or experimental injuries and their interventions, transplantation, neurodegenerative disorders and experimental strategies to improve regeneration or functional recovery and rehabilitation. Experimental and clinical research papers adopting fresh conceptual approaches are encouraged. The overriding criteria for publication are novelty, significant experimental or clinical relevance and interest to a multidisciplinary audience.

RNN Editorial Office
Prof. Dr. Bernhard Sabel
Institut für Medizinische Psychologie
Medizinische Fakultät
Otto-v.-Guericke Universität Magdeburg
39120 Magdeburg/Germany
Tel: +49-391-672-1800
Fax: +49-391-672-1803
Email: rnn@med.ovgu.de

ABOUT IOS PRESS

Commencing its publishing activities in 1987, IOS Press serves the information needs of scientific and medical communities worldwide. IOS Press now (co-)publishes over 100 international journals and about 75 book titles each year on subjects ranging from computer sciences and mathematics to medicine and the natural sciences.

IOS Press continues its rapid growth, embracing new technologies for the timely dissemination of information. All journals are available electronically and an e-book platform was launched in 2005.

Headquartered in Amsterdam with satellite offices in the USA, Germany, India and China, IOS Press has established several strategic co-publishing initiatives. Notable acquisitions included Delft University Press in 2005 and Millpress Science Publishers in 2008.



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Phase 2 Clinical Trial to Treat Rare Hereditary Muscle Disease Shows Promise

Patients with GNEM have mutations in a gene controlling a key enzyme in the synthesis pathway for sialic acid (SA). They typically experience distal muscle weakness, commonly presenting as foot drop. As the disease progresses, the muscle atrophy spreads to affect not only the lower extremities, but the upper extremities as well, leading to loss of ambulation and reliance on others for their care.

The therapy used aceneuramic acid extended release (Ace-ER) tablets in two dosages, 3 g/day and 6 g/day. For 24 weeks, one group received the 3g/day dosage, a second group received the 6g/day dosage, and a third group received a placebo. After 24 weeks, the placebo patients were switched to either the 3g/day or 6g/day dosage, while the treated groups continued at the same dosages. There were 47 patients randomized in this Phase 2 double-blind study.

Therapy with Ace-ER led to dose-dependent increases in serum sialic acid levels. Compared to placebo, patients who received the 6g/day dosages retained muscle strength in their upper extremities after 24 weeks. This effect was maintained in the upper extremities over an additional 24 weeks for the 6 g/day dose compared with the 3 g/day dose. In the lower extremities, a similar dose-dependent trend was observed but did not reach statistical significance. The maintenance of strength was also reflected in clinician- and patient-reported outcomes of the participating patients.

"In summary, this is the first evidence in humans that SA supplementation may affect the progression of muscle weakness in GNEM," explained lead investigator Zohar Argov, MD, Hadassah-Hebrew University Medical Center, Jerusalem. "This Phase 2 study included subjects at various stages of the disease including those who were advancing to a wheelchair-bound state. The findings suggest that initiating treatment earlier in the disease course may lead to better outcomes. It is our hope that the Phase 3 trial will result in the first therapeutic agent for this condition."

#  #  #

NOTES FOR EDITORS

"Aceneuramic Acid Extended Release Administration Maintains Upper Limb Muscle Strength in a 48-Week Study of Subjects with GNE Myopathy: Results from a Phase 2, Randomized, Controlled Study," by Zohar Argov, MD; Yoseph Caraco, MD; Heather Lau, MD; Alan Pestronk, MD; Perry B. Shieh, MD; Alison Skrinar, PhD; Tony Koutsoukos, PhD; Ruhi Ahmed, PhD; Julia Martinisi; and Emil Kakkis, MD, PhD (DOI 10.3233/JND-159900), published in advance of Journal of Neuromuscular Diseases, Volume 3, Issue 1 by IOS Press. The study is openly available at http://ift.tt/1TCsiOq.

Contact Daphne Watrin, IOS Press, +31 20 688 3355, d.watrin@iospress.nl for additional information. Journalists who wish to interview the authors should contact +1 844-758-7273 or ir@ultragenyx.com.  

ABOUT THE JOURNAL OF NEUROMUSCULAR DISEASES (JND)

Launched in June 2014, the Journal of Neuromuscular Diseases facilitates progress in understanding the molecular genetics/correlates, pathogenesis, pharmacology, diagnosis and treatment of acquired and genetic neuromuscular diseases (including muscular dystrophy, myasthenia gravis, spinal muscular atrophy, neuropathies, myopathies, myotonias and myositis). The journal publishes research reports, reviews, short communications. Guided by Editors-in-Chief Carsten G. Bönnemann (National Institute of Neurological Disorders and Stroke, NIH) and Hanns Lochmüller (Institute of Genetic Medicine, Newcastle University), the journal is dedicated to providing an open forum for original research in basic science, translational and clinical research that will improve our fundamental understanding and lead to effective treatments of neuromuscular diseases.

ABOUT IOS PRESS

Commencing its publishing activities in 1987, IOS Press serves the information needs of scientific and medical communities worldwide. IOS Press now (co-)publishes over 100 international journals and about 75 book titles each year on subjects ranging from computer sciences and mathematics to medicine and the natural sciences.

IOS Press continues its rapid growth, embracing new technologies for the timely dissemination of information. All journals are available electronically and an e-book platform was launched in 2005. Headquartered in Amsterdam with satellite offices in the USA, Germany, India and China, IOS Press has established several strategic co-publishing initiatives. Notable acquisitions included Delft University Press in 2005 and Millpress Science Publishers in 2008.



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Sustainability, Vol. 8, Pages 196: Seven Food System Metrics of Sustainable Nutrition Security

Sustainability considerations have been absent from most food security assessments conducted to date, despite the tremendous economic, environmental, and social implications of meeting accelerating food demand in the face of water shortages and climate change. In addition, previous food security work has generally focused only on achieving adequate calories, rather than addressing dietary diversity and micronutrient adequacy, both of which are critical to maintaining a healthy overall nutritional status. In response to the limitations of previous assessments, a new methodology is proposed here based on the concept of "sustainable nutrition security" (SNS). This novel assessment methodology is intended to remedy both kinds of deficiencies in the previous work by defining seven metrics, each based on a combination of multiple indicators, for use in characterizing sustainable nutrition outcomes of food systems: (1) food nutrient adequacy; (2) ecosystem stability; (3) food affordability and availability; (4) sociocultural wellbeing; (5) food safety; (6) resilience; and (7) waste and loss reduction. Each of the metrics comprises multiple indicators that are combined to derive an overall score (0–100). A novel SNS assessment methodology based on these metrics can be deployed by decision-makers and investors to set meaningful goals, track progress, and evaluate the potential impact of food system interventions intended to improve sustainability and human nutrition outcomes.

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Remote Sensing, Vol. 8, Pages 166: First Experience with Sentinel-2 Data for Crop and Tree Species Classifications in Central Europe

The study presents the preliminary results of two classification exercises assessing the capabilities of pre-operational (August 2015) Sentinel-2 (S2) data for mapping crop types and tree species. In the first case study, an S2 image was used to map six summer crop species in Lower Austria as well as winter crops/bare soil. Crop type maps are needed to account for crop-specific water use and for agricultural statistics. Crop type information is also useful to parametrize crop growth models for yield estimation, as well as for the retrieval of vegetation biophysical variables using radiative transfer models. The second case study aimed to map seven different deciduous and coniferous tree species in Germany. Detailed information about tree species distribution is important for forest management and to assess potential impacts of climate change. In our S2 data assessment, crop and tree species maps were produced at 10 m spatial resolution by combining the ten S2 spectral channels with 10 and 20 m pixel size. A supervised Random Forest classifier (RF) was deployed and trained with appropriate ground truth. In both case studies, S2 data confirmed its expected capabilities to produce reliable land cover maps. Cross-validated overall accuracies ranged between 65% (tree species) and 76% (crop types). The study confirmed the high value of the red-edge and shortwave infrared (SWIR) bands for vegetation mapping. Also, the blue band was important in both study sites. The S2-bands in the near infrared were amongst the least important channels. The object based image analysis (OBIA) and the classical pixel-based classification achieved comparable results, mainly for the cropland. As only single date acquisitions were available for this study, the full potential of S2 data could not be assessed. In the future, the two twin S2 satellites will offer global coverage every five days and therefore permit to concurrently exploit unprecedented spectral and temporal information with high spatial resolution.

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Materials, Vol. 9, Pages 120: Discussion on Microwave-Matter Interaction Mechanisms by In Situ Observation of “Core-Shell” Microstructure during Microwave Sintering

This research aims to deepen the understanding of the interaction mechanisms between microwave and matter in a metal-ceramic system based on in situ synchrotron radiation computed tomography. A special internal "core-shell" microstructure was discovered for the first time and used as an indicator for the interaction mechanisms between microwave and matter. Firstly, it was proved that the microwave magnetic field acted on metal particles by way of inducing an eddy current in the surface of the metal particles, which led to the formation of a "core-shell" microstructure in the metal particles. On this basis, it was proposed that the ceramic particles could change the microwave field and open a way for the microwave, thereby leading to selective heating in the region around the ceramic particles, which was verified by the fact that all the "core-shell" microstructure was located around ceramic particles. Furthermore, it was indicated that the ceramic particles would gather the microwaves, and might lead to local heating in the metal-ceramic contact region. The focusing of the microwave was proved by the quantitative analysis of the evolution rate of the "core-shell" microstructure in a different region. This study will help to reveal the microwave-matter interaction mechanisms during microwave sintering.

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Sensors, Vol. 16, Pages 273: Investigation of the Performance of HEMT-Based NO, NO2 and NH3 Exhaust Gas Sensors for Automotive Antipollution Systems

We report improved sensitivity to NO, NO2 and NH3 gas with specially-designed AlGaN/GaN high electron mobility transistors (HEMT) that are suitable for operation in the harsh environment of diesel exhaust systems. The gate of the HEMT device is functionalized using a Pt catalyst for gas detection. We found that the performance of the sensors is enhanced at a temperature of 600 °C, and the measured sensitivity to 900 ppm-NO, 900 ppm-NO 2 and 15 ppm-NH 3 is 24%, 38.5% and 33%, respectively, at 600 °C. We also report dynamic response times as fast as 1 s for these three gases. Together, these results indicate that HEMT sensors could be used in a harsh environment with the ability to control an anti-pollution system in real time.

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Materials, Vol. 9, Pages 122: Effect of Friction Stir Process Parameters on the Mechanical and Thermal Behavior of 5754-H111 Aluminum Plates

A study of the Friction Stir Welding (FSW) process was carried out in order to evaluate the influence of process parameters on the mechanical properties of aluminum plates (AA5754-H111). The process was monitored during each test by means of infrared cameras in order to correlate temperature information with eventual changes of the mechanical properties of joints. In particular, two process parameters were considered for tests: the welding tool rotation speed and the welding tool traverse speed. The quality of joints was evaluated by means of destructive and non-destructive tests. In this regard, the presence of defects and the ultimate tensile strength (UTS) were investigated for each combination of the process parameters. A statistical analysis was carried out to assess the correlation between the thermal behavior of joints and the process parameters, also proving the capability of Infrared Thermography for on-line monitoring of the quality of joints.

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IJERPH, Vol. 13, Pages 246: Effects of in Utero Exposure to Dicyclohexyl Phthalate on Rat Fetal Leydig Cells

Dicyclohexyl phthalate (DCHP) is one of the phthalate plasticizers. The objective of the present study was to investigate the effects of DCHP on fetal Leydig cell distribution and function as well as testis development. Female pregnant Sprague Dawley dams orally received vehicle (corn oil, control) or DCHP (10, 100, and 500 mg/kg/day) from gestational day (GD) 12 to GD 21. At GD 21.5, testicular testosterone production, fetal Leydig cell number and distribution, testicular gene and protein expression levels were examined. DCHP administration produced a dose-dependent increase of the incidence of multinucleated gonocytes at ≥100 mg/kg. DCHP dose-dependently increased abnormal fetal Leydig cell aggregation and decreased fetal Leydig cell size, cytoplasmic size, and nuclear size at ≥10 mg/kg. DCHP reduced the expression levels of steroidogenesis-related genes (including Star, Hsd3b1, and Hsd17b3) and testis-descent related gene Insl3 as well as protein levels of 3β-hydroxysteroid dehydrogenase 1 (HSD3B1) and insulin-like 3 (INSL3) at ≥10 mg/kg. DCHP significantly inhibited testicular testosterone levels at ≥100 mg/kg. The results indicate that in utero exposure to DCHP affects the expression levels of fetal Leydig cell steroidogenic genes and results in the occurrence of multinucleated gonocytes and Leydig cell aggregation.

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IJMS, Vol. 17, Pages 266: Endogenous Sulfur Dioxide Inhibits Vascular Calcification in Association with the TGF-β/Smad Signaling Pathway

The study was designed to investigate whether endogenous sulfur dioxide (SO2) plays a role in vascular calcification (VC) in rats and its possible mechanisms. In vivo medial vascular calcification was induced in rats by vitamin D3 and nicotine for four weeks. In vitro calcification of cultured A7r5 vascular smooth muscle cells (VSMCs) was induced by calcifying media containing 5 mmol/L CaCl2. Aortic smooth muscle (SM) α-actin, runt-related transcription factor 2 (Runx2), transforming growth factor-β (TGF-β) and Smad expression was measured. VC rats showed dispersed calcified nodules among the elastic fibers in calcified aorta with increased aortic calcium content and alkaline phosphatase (ALP) activity. SM α-actin was markedly decreased, but the osteochondrogenic marker Runx2 concomitantly increased and TGF-β/Smad signaling was activated, in association with the downregulated SO2/aspartate aminotransferase (AAT) pathway. However, SO2 supplementation successfully ameliorated vascular calcification, and increased SM α-actin expression, but inhibited Runx2 and TGF-β/Smad expression. In calcified A7r5 VSMCs, the endogenous SO2/AAT pathway was significantly downregulated. SO2 treatment reduced the calcium deposits, calcium content, ALP activity and Runx2 expression and downregulated the TGF-β/Smad pathway in A7r5 cells but increased SM α-actin expression. In brief, SO2 significantly ameliorated vascular calcification in association with downregulation of the TGF-β/Smad pathway.

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Sustainability, Vol. 8, Pages 197: Promoting Sustainability through EMS Application: A Survey Examining the Critical Factors about EMAS Registration in Italian Organizations

One of the tools set by the European Community (EC) to reduce the environmental impact of firms is EMAS Regulation (Regulation (EC) No 1221/2009), setting up an Environmental Management System (EMS), which aims for a continuous improvement of environmental performances. Italy has the highest number of certified organization among all European Member States, accounting for over one thousand registrations. The paper presents the result of a survey conducted through a questionnaire about EMAS implementation and targeted to all Italian registered organizations. Of nearly 1000 organizations, over 500 answers were collected. The main goal is to understand how organizations experience the scheme, focusing on main drivers for its adoption, main difficulties encountered, and perceived benefits. In particular, survey results contribute to define a reflection on the difficulties regarding EMAS diffusion among European companies. Aspects identified as critical can lead to a contraction of registration requests, especially those formulated by SMEs, which constitute the majority of Italian companies. Moreover, perceived difficulties might affect the firms' willingness to renew EMAS registration. Data provided by the Italian Institute for Environmental Protection and Research (ISPRA) recently highlighted the increasing rate of firms who decide to withdraw from registration. This study offers interesting inputs related to main critical issues in EMAS implementation, which can be the baseline for future research on companies that abandon the certification scheme, in order to provide suggestions for the improvement of its effectiveness both for national and communitarian institutions.

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Micromachines, Vol. 7, Pages 34: Surface Free Energy Determination of APEX Photosensitive Glass

Surface free energy (SFE) plays an important role in microfluidic device operation. Photosensitive glasses such as APEX offer numerous advantages over traditional glasses for microfluidics, yet the SFE for APEX has not been previously reported. We calculate SFE with the Owens/Wendt geometric method by using contact angles measured with the Sessile drop technique. While the total SFE for APEX is found to be similar to traditional microstructurable glasses, the polar component is lower, which is likely attributable to composition. The SFE was modified at each stage of device fabrication, but the SFE of the stock and fully processed glass was found to be approximately the same at a value of 51 mJ·m−2. APEX exhibited inconsistent wetting behavior attributable to an inhomogeneous surface chemical composition. Means to produce more consistent wetting of photosensitive glass for microfluidic applications are discussed.

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Nutrients, Vol. 8, Pages 108: Metabolic Effects of a 24-Week Energy-Restricted Intervention Combined with Low or High Dairy Intake in Overweight Women: An NMR-Based Metabolomics Investigation

We investigated the effect of a 24-week energy-restricted intervention with low or high dairy intake (LD or HD) on the metabolic profiles of urine, blood and feces in overweight/obese women by NMR spectroscopy combined with ANOVA-simultaneous component analysis (ASCA). A significant effect of dairy intake was found on the urine metabolome. HD intake increased urinary citrate, creatinine and urea excretion, and decreased urinary excretion of trimethylamine-N-oxide (TMAO) and hippurate relative to the LD intake, suggesting that HD intake was associated with alterations in protein catabolism, energy metabolism and gut microbial activity. In addition, a significant time effect on the blood metabolome was attributed to a decrease in blood lipid and lipoprotein levels due to the energy restriction. For the fecal metabolome, a trend for a diet effect was found and a series of metabolites, such as acetate, butyrate, propionate, malonate, cholesterol and glycerol tended to be affected. Overall, even though these effects were not accompanied by a higher weight loss, the present metabolomics data reveal that a high dairy intake is associated with endogenous metabolic effects and effects on gut microbial activity that potentially impact body weight regulation and health. Moreover, ASCA has a great potential for exploring the effect of intervention factors and identifying altered metabolites in a multi-factorial metabolomic study.

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IFNL4 genotype is associated with jaundice and elevated aminotransferase levels during acute HCV infection: findings from the InC3 Collaborative

Open Forum Infectious Diseases

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Atorvastatin and fluvastatin are associated with dose-dependent reductions in cirrhosis and HCC, among patients with HCV Results from ERCHIVES

Hepatology

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Diagnostic differentiation of pancreatic neuroendocrine tumor from other neoplastic solid pancreatic lesions during endoscopic ultrasound-guided fine-needle aspiration

Pancreas

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Randomized, double-blind, placebo-controlled phase III trial of apatinib in patients with chemotherapy-refractory advanced or metastatic adenocarcinoma of the stomach or gastroesophageal junction

Journal of Clinical Oncology

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Evolving strategy for HCV testing in an Italian tertiary care hospital

Journal of Clinical Virology

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Helicobacter pylori infection is associated with a reduced risk of developing eosinophilic oesophagitis

Alimentary Pharmacology and Therapeutics

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Mismatch repair status in patients with primary operable colorectal cancer: associations with the local and systemic tumour environment

British Journal of Cancer

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Early lactate clearance for predicting active bleeding in critically ill patients with acute upper gastrointestinal bleeding: a retrospective study

Internal and Emergency Medicine

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Diagnostics, Vol. 6, Pages 12: Diagnostics Now in PubMed and PubMed Central

It is with great pleasure and proud that we can announce that Diagnostics is now indexed and searchable in PubMed.[...]

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Influence of chronic low back pain and fear of movement on the activation of the transversely oriented abdominal muscles during forward bending

Publication date: Available online 23 February 2016
Source:Journal of Electromyography and Kinesiology
Author(s): Hugo Massé-Alarie, Louis-David Beaulieu, Richard Preuss, Cyril Schneider
IntroductionChronic low back pain (CLBP) and fear of movement (kinesiophobia) are associated with an overactivation of paravertebral muscles during forward bending. This impairs spine motor control and contributes to pain perpetuation. However, the abdominal muscles activation is engaged too in spine stabilization but its modulation with kinesiophobia remains unknown. Our study tested whether CLBP and kinesiophobia affected the activation pattern of abdominal muscles during trunk flexion/extension.MethodsSurface electromyographical recordings of the transversus abdominus/internal oblique (TrA/IO) and external oblique (EO) muscles were analyzed in 12 people with CLBP and 13 pain-free subjects during low-velocity forward bending back and forth from erected posture. Tampa scale of kinesiophobia was also administrated.ResultsTrA/IO activation, but not EO, was modulated across the phases of movement in both groups, i.e. maximal at onset of flexion and end of extension, and minimal at full flexion. In CLBP group only, TrA/IO activation was increased near to full trunk flexion and in correlation with kinesiophobia.ConclusionsThe phase-dependence of TrA/IO activation during trunk flexion/extension in standing may have a role in spine motor control. The influence of kinesiophobia in CLBP should be further investigated as an important target in CLBP management.



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The Effects of Upper Limb Posture and a Sub-Maximal Gripping Task on Corticospinal Excitability to Muscles of the Forearm

Publication date: Available online 23 February 2016
Source:Journal of Electromyography and Kinesiology
Author(s): Davis A. Forman, Julianne Baarbe, Julian Daligadu, Bernadette Murphy, Michael W.R. Holmes
Variations in handgrip force influences shoulder muscle activity, and this effect is dependent upon upper limb position. Previous work suggests that neural coupling between proximal and distal muscles with changes in joint position is a possible mechanism but these studies tend to use artificially constrained postures that do not reflect activities of daily living. The purpose of this study was to examine the effects of upper limb posture on corticospinal excitability to the forearm muscles during workplace relevant arm positions. Motor evoked potentials (MEPs) were elicited in four forearm muscles via transcranial magnetic stimulation at six arm positions (45, 90 and 120° of humeral elevation in both the flexion and abduction planes). MEPs were delivered as stimulus-response curves (SRCs) at rest and at constant intensity during two gripping tasks. Boltzmann plateau levels were smaller for the flexor carpi radialis in flexion at 45 ° versus 90° (p = 0.0008). Extensor carpi radialis had a greater plateau during flexion than abduction (p = 0.0042). Corticospinal excitability to the forearm muscles were influenced by upper limb posture during both the resting and gripping conditions. This provides further evidence that upper limb movements are controlled as a whole rather than segmentally and is relevant for workplace design considerations.



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